The Phylogenetic Handbook: A Practical Approach to Phylogenetic Analysis and Hypothesis Testing

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9780521730716: The Phylogenetic Handbook: A Practical Approach to Phylogenetic Analysis and Hypothesis Testing

The Phylogenetic Handbook is a broad, hands on guide to theory and practice of nucleotide and protein phylogenetic analysis. This second edition includes six new chapters, covering topics such as Bayesian inference, tree topology testing and the impact of recombination on phylogenies, as well as a detailed section on molecular adaptation. The book has a stronger focus on hypothesis testing than the previous edition, with more extensive discussions on recombination analysis, detecting molecular adaptation and genealogy-based population genetics. Many chapters include elaborate practical sections, which have been updated to introduce the reader to the most recent versions of sequence analysis and phylogeny software, including BLAST, FastA, Clustal, T-coffee, Muscle, DAMBE, Tree-puzzle, Phylip, MEGA, PAUP*, IQPNNI, CONSEL, ModelTest, Prottest, PAML, HYPHY, MrBayes, BEAST, LAMARC, SplitsTree, and RDP. Many analysis tools are described by their original authors, resulting in clear explanations that constitute an ideal teaching guide for advanced-level undergraduate and graduate students.

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Book Description:

With a stronger focus on hypothesis testing, elaborate practical sections and recent versions of sequence analysis and software, this edition includes six new chapters. Topics on Bayesian inference, tree topology testing and the impact of recombination on phylogenies have been added as well as a detailed section on molecular adaptation.

About the Author:

Philippe Lemey is a FWO postdoctoral researcher at the Rega Institute, Katholieke Universiteit Leuven, Belgium, where he completed his PhD in Medical Sciences. He has been an EMBO fellow and a Marie-Curie fellow in the Evolutionary Biology Group at the Department of Zoology, University of Oxford. His research focuses on molecular evolution of viruses by integrating molecular biology and computational approaches.

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Descripción Cambridge University Press, 2009. PAP. Estado de conservación: New. New Book. Shipped from UK in 4 to 14 days. Established seller since 2000. Nº de ref. de la librería FM-9780521730716

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Descripción CAMBRIDGE UNIVERSITY PRESS, United Kingdom, 2011. Paperback. Estado de conservación: New. 2nd Revised edition. Language: English . Brand New Book. The Phylogenetic Handbook is a broad, hands on guide to theory and practice of nucleotide and protein phylogenetic analysis. This second edition includes six new chapters, covering topics such as Bayesian inference, tree topology testing and the impact of recombination on phylogenies, as well as a detailed section on molecular adaptation. The book has a stronger focus on hypothesis testing than the previous edition, with more extensive discussions on recombination analysis, detecting molecular adaptation and genealogy-based population genetics. Many chapters include elaborate practical sections, which have been updated to introduce the reader to the most recent versions of sequence analysis and phylogeny software, including BLAST, FastA, Clustal, T-coffee, Muscle, DAMBE, Tree-puzzle, Phylip, MEGA, PAUP*, IQPNNI, CONSEL, ModelTest, Prottest, PAML, HYPHY, MrBayes, BEAST, LAMARC, SplitsTree, and RDP. Many analysis tools are described by their original authors, resulting in clear explanations that constitute an ideal teaching guide for advanced-level undergraduate and graduate students. Nº de ref. de la librería AAA9780521730716

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Editorial: CAMBRIDGE UNIVERSITY PRESS, United Kingdom (2011)
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Descripción CAMBRIDGE UNIVERSITY PRESS, United Kingdom, 2011. Paperback. Estado de conservación: New. 2nd Revised edition. Language: English . Brand New Book. The Phylogenetic Handbook is a broad, hands on guide to theory and practice of nucleotide and protein phylogenetic analysis. This second edition includes six new chapters, covering topics such as Bayesian inference, tree topology testing and the impact of recombination on phylogenies, as well as a detailed section on molecular adaptation. The book has a stronger focus on hypothesis testing than the previous edition, with more extensive discussions on recombination analysis, detecting molecular adaptation and genealogy-based population genetics. Many chapters include elaborate practical sections, which have been updated to introduce the reader to the most recent versions of sequence analysis and phylogeny software, including BLAST, FastA, Clustal, T-coffee, Muscle, DAMBE, Tree-puzzle, Phylip, MEGA, PAUP*, IQPNNI, CONSEL, ModelTest, Prottest, PAML, HYPHY, MrBayes, BEAST, LAMARC, SplitsTree, and RDP. Many analysis tools are described by their original authors, resulting in clear explanations that constitute an ideal teaching guide for advanced-level undergraduate and graduate students. Nº de ref. de la librería AAA9780521730716

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Descripción 2009. PAP. Estado de conservación: New. New Book. Shipped from US within 10 to 14 business days. Established seller since 2000. Nº de ref. de la librería VM-9780521730716

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Descripción Cambridge University Press. Paperback. Estado de conservación: New. New copy - Usually dispatched within 2 working days. Nº de ref. de la librería B9780521730716

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Descripción 2009. PAP. Estado de conservación: New. New Book.Shipped from US within 10 to 14 business days. Established seller since 2000. Nº de ref. de la librería IB-9780521730716

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Lemey, Philippe (Editor)/ Salemi, Marco (Editor)/ Vandamme, Anne-Mieke (Editor)
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Descripción Cambridge University Press, 2009. Paperback. Estado de conservación: Brand New. 2nd edition. 736 pages. 9.60x6.70x1.40 inches. In Stock. Nº de ref. de la librería __0521730716

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Philippe Lemey (editor), Marco Salemi (editor), Anne-Mieke Vandamme (editor)
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Descripción Cambridge University Press 2009-03-26, Cambridge, 2009. paperback. Estado de conservación: New. Nº de ref. de la librería 9780521730716

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EDITED BY PHILIPPE LEMEY , MARCO SALEMI , ANNE-MIEKE VANDAMME
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Descripción 2009. Paperback. Estado de conservación: NEW. 9780521730716 This listing is a new book, a title currently in-print which we order directly and immediately from the publisher. Nº de ref. de la librería HTANDREE0472820

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Descripción Estado de conservación: New. Publisher/Verlag: Cambridge University Press | A Practical Approach to Phylogenetic Analysis and Hypothesis Testing | A broad, hands on guide with detailed explanations of current methodology, relevant exercises and popular software tools. | 'The Phylogenetic Handbook is a broad, hands on guide to theory and practice of nucleotide and protein phylogenetic analysis. This second edition includes six new chapters, covering topics such as Bayesian inference, tree topology testing and the impact of recombination on phylogenies, as well as a detailed section on molecular adaptation. The book has a stronger focus on hypothesis testing than the previous edition, with more extensive discussions on recombination analysis, detecting molecular adaptation and genealogy-based population genetics. Many chapters include elaborate practical sections, which have been updated to introduce the reader to the most recent versions of sequence analysis and phylogeny software, including BLAST, FastA, Clustal, T-coffee, Muscle, DAMBE, Tree-puzzle, Phylip, MEGA, PAUP , IQPNNI, CONSEL, ModelTest, Prottest, PAML, HYPHY, MrBayes, BEAST, LAMARC, SplitsTree, and RDP. Many analysis tools are described by their original authors, resulting in clear explanations that constitute an ideal teaching guide for advanced-level undergraduate and graduate students.With a stronger focus on hypothesis testing, elaborate practical sections and recent versions of sequence analysis and software, this edition includes six new chapters. Topics on Bayesian inference, tree topology testing and the impact of recombination on phylogenies have been added as well as a detailed section on molecular adaptation. | Part I. Introduction: 1. Basic concepts of molecular evolution Anne-Mieke Vandamme; Part II. Data Preparation: 2. Sequence databases and database searching Guy Bottu, Marc Van Ranst and Philippe Lemey; 3. Multiple sequence alignment Des Higgins and Philippe Lemey; Part III. Phylogenetic Inference: 4. Nucleotide substitution models Korbinian Strimmer, Arndt von Haeseler and Marco Salemi; 5. Phylogenetic inference based on distance methods Yves Van de Peer and Marco Salemi; 6. Phylogenetic inference using maximum likelihood methods Heiko A. Schmidt and Arndt von Haeseler; 7. Bayesian phylogenetic analysis using MRBAYES Fredrik Ronquist, Paul van der Mark and John P. Huelsenbeck; 8. Phylogeny inference based on parsimony and other methods using PAUP David L. Swofford and Jack Sullivan; 9. Phylogenetic analysis using protein sequences Fred R. Opperdoes and Philippe Lemey; Part IV. Testing Models and Trees: 10. Selecting models of evolution David Posada; 11. Molecular clock analysis Philippe Lemey and David Posada; 12. Testing tree topologies Heiko Schmidt; Part V. Molecular Adaptation: 13. Natural selection and adaptation of molecular sequences Oliver G. Pybus and Beth Shapiro; 14. Estimating selection pressures on alignments of coding sequences Sergei L. Kosakovsky Pond, Art F. Y. Poon, and Simon D. W. Frost; Part VI. Recombination: 15. Introduction to recombination detection Philippe Lemey and David Posada; 16. Detecting and characterizing individual recombination events Mika Salminen and Darren Martin; Part VII. Population Genetics: 17. The coalescent: population genetic inference using genealogies Allen Rodrigo; 18. Bayesian evolutionary analysis by sampling trees Alexei Drummond and Andrew Rambaut; 19. LAMARC: estimating population genetic parameters from molecular data Mary K. Kuhner; Part VIII. Additional Topics: 20. Assessing substitution saturation with DAMBE Xuhua Xia and Philippe Lemey; 21. Split networks: a tool for exploring complex evolutionary relationships in molecular data Vincent Moulton and Katharina T. Huber. | Format: Paperback | Language/Sprache: english | 1460 gr | 247x174x34 mm | 750 pp. Nº de ref. de la librería K9780521730716

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